IL_5UQ8_026
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ8_026 not in the Motif Atlas
- Homologous match to IL_7RQB_027
- Geometric discrepancy: 0.1341
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5UQ8|1|A|U|858
5UQ8|1|A|G|859
5UQ8|1|A|U|860
5UQ8|1|A|A|861
5UQ8|1|A|G|862
*
5UQ8|1|A|C|915
5UQ8|1|A|G|916
5UQ8|1|A|A|917
5UQ8|1|A|A|918
5UQ8|1|A|G|919
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L27
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- 50S ribosomal protein L16
Coloring options: