IL_5UQ8_030

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_030 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.2289

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5UQ8|1|A|G|875
5UQ8|1|A|C|876
5UQ8|1|A|U|877
*
5UQ8|1|A|A|899
5UQ8|1|A|A|900
5UQ8|1|A|A|901
5UQ8|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L16

Chain Z

50S ribosomal protein L25