IL_5UQ8_036

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_036 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1393

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5UQ8|1|A|C|1004
5UQ8|1|A|C|1005
5UQ8|1|A|C|1006
5UQ8|1|A|C|1007
5UQ8|1|A|C|1008
5UQ8|1|A|A|1009
5UQ8|1|A|A|1010
5UQ8|1|A|G|1011
*
5UQ8|1|A|C|1150
5UQ8|1|A|G|1151

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L13

Chain U

50S ribosomal protein L20