IL_5UQ8_047

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5UQ8|1|A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_047 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1014

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5UQ8|1|A|C|1208
5UQ8|1|A|G|1209
5UQ8|1|A|A|1210
5UQ8|1|A|U|1211
5UQ8|1|A|G|1212
5UQ8|1|A|A|1213
5UQ8|1|A|A|1214
5UQ8|1|A|G|1215
*
5UQ8|1|A|U|1234
5UQ8|1|A|G|1235
5UQ8|1|A|G|1236
5UQ8|1|A|A|1237
5UQ8|1|A|G|1238

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L20