IL_5UQ8_051

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

5UQ8|1|A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_051 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1903

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5UQ8|1|A|G|1319
5UQ8|1|A|C|1320
5UQ8|1|A|A|1321
5UQ8|1|A|A|1322
5UQ8|1|A|U|1323
*
5UQ8|1|A|A|1331
5UQ8|1|A|G|1332
5UQ8|1|A|C|1333

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L22

Chain X

50S ribosomal protein L23