IL_5UQ8_053

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_053 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1669

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5UQ8|1|A|U|1357
5UQ8|1|A|G|1358
5UQ8|1|A|A|1359
5UQ8|1|A|A|1360
5UQ8|1|A|G|1361
*
5UQ8|1|A|C|1370
5UQ8|1|A|G|1371
5UQ8|1|A|U|1372
5UQ8|1|A|A|1373
5UQ8|1|A|G|1374

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2