IL_5UQ8_061

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

5UQ8|1|A|C|1509|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_061 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3057

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5UQ8|1|A|U|1481
5UQ8|1|A|G|1482
*
5UQ8|1|A|C|1506
5UQ8|1|A|A|1507
5UQ8|1|A|A|1508
5UQ8|1|A|C|1509|||A
5UQ8|1|A|A|1509|||B
5UQ8|1|A|A|1509|||C
5UQ8|1|A|G|1510

Current chains

Chain A

23S rRNA

Nearby chains