IL_5UQ8_074

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_074 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.121

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5UQ8|1|A|U|1851
5UQ8|1|A|C|1852
5UQ8|1|A|A|1853
5UQ8|1|A|A|1854
5UQ8|1|A|G|1855
*
5UQ8|1|A|C|1887
5UQ8|1|A|G|1888
5UQ8|1|A|A|1889
5UQ8|1|A|A|1890
5UQ8|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain z

Transfer RNA; tRNA