IL_5UQ8_075

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_075 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1101

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5UQ8|1|A|G|1856
5UQ8|1|A|G|1857
5UQ8|1|A|G|1858
5UQ8|1|A|A|1859
5UQ8|1|A|G|1860
*
5UQ8|1|A|C|1882
5UQ8|1|A|G|1883
5UQ8|1|A|A|1884
5UQ8|1|A|A|1885
5UQ8|1|A|C|1886

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain C

50S ribosomal protein L1

Chain z

Transfer RNA; tRNA