IL_5UQ8_087

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

5UQ8|1|A|A|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_087 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.3281

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|A|G|2124
5UQ8|1|A|G|2125
5UQ8|1|A|A|2126
5UQ8|1|A|G|2127
*
5UQ8|1|A|C|2161
5UQ8|1|A|G|2162
5UQ8|1|A|C|2163
5UQ8|1|A|C|2164
5UQ8|1|A|G|2165
5UQ8|1|A|G|2166
5UQ8|1|A|U|2167
5UQ8|1|A|G|2168
5UQ8|1|A|A|2169
5UQ8|1|A|A|2170
5UQ8|1|A|A|2171
5UQ8|1|A|U|2172
5UQ8|1|A|A|2173
5UQ8|1|A|C|2174

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L1

Chain z

Transfer RNA; tRNA