IL_5UQ8_089

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_089 not in the Motif Atlas

Geometric match to IL_7RQB_088

Geometric discrepancy: 0.2343

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5UQ8|1|A|C|2297
5UQ8|1|A|A|2298
5UQ8|1|A|G|2299
*
5UQ8|1|A|C|2317
5UQ8|1|A|G|2318
5UQ8|1|A|G|2319
5UQ8|1|A|A|2320
5UQ8|1|A|G|2321

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

50S ribosomal protein L5

Chain S

50S ribosomal protein L18