IL_5UQ8_099

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5UQ8|1|A|A|2572, 5UQ8|1|A|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_099 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1263

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5UQ8|1|A|C|2512
5UQ8|1|A|G|2513
*
5UQ8|1|A|C|2571
5UQ8|1|A|A|2572
5UQ8|1|A|C|2573
5UQ8|1|A|G|2574

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain N

50S ribosomal protein L13