IL_5UQ8_100

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5UQ8|1|A|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_100 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1146

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

5UQ8|1|A|U|2522
5UQ8|1|A|G|2523
*
5UQ8|1|A|C|2540
5UQ8|1|A|A|2541
5UQ8|1|A|A|2542
5UQ8|1|A|G|2543

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain N

50S ribosomal protein L13