IL_5UQ8_104

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_104 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1266

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5UQ8|1|A|C|2652
5UQ8|1|A|U|2653
5UQ8|1|A|A|2654
5UQ8|1|A|G|2655
5UQ8|1|A|U|2656
5UQ8|1|A|A|2657
5UQ8|1|A|C|2658
*
5UQ8|1|A|G|2663
5UQ8|1|A|G|2664
5UQ8|1|A|A|2665
5UQ8|1|A|C|2666
5UQ8|1|A|C|2667
5UQ8|1|A|G|2668

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L6