IL_5UQ8_108

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5UQ8|1|A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_108 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1423

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5UQ8|1|A|G|2737
5UQ8|1|A|A|2738
5UQ8|1|A|U|2739
5UQ8|1|A|A|2740
5UQ8|1|A|A|2741
5UQ8|1|A|C|2742
*
5UQ8|1|A|G|2762
5UQ8|1|A|G|2763
5UQ8|1|A|A|2764
5UQ8|1|A|A|2765
5UQ8|1|A|G|2766
5UQ8|1|A|C|2767

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain N

50S ribosomal protein L13