IL_5UQ8_124
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5UQ8|1|a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ8_124 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.4603
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_12745.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5UQ8|1|a|G|148
5UQ8|1|a|A|149
5UQ8|1|a|C|150
5UQ8|1|a|A|151
5UQ8|1|a|A|152
5UQ8|1|a|C|153
*
5UQ8|1|a|G|168
5UQ8|1|a|C|169
5UQ8|1|a|U|170
5UQ8|1|a|A|171
5UQ8|1|a|A|172
5UQ8|1|a|U|173
5UQ8|1|a|C|174
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain t
- 30S ribosomal protein S20
Coloring options: