IL_5UQ8_134

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_134 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1662

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5UQ8|1|a|G|450
5UQ8|1|a|A|451
5UQ8|1|a|A|452
5UQ8|1|a|A|453
5UQ8|1|a|C|454
5UQ8|1|a|C|455
*
5UQ8|1|a|G|476
5UQ8|1|a|A|477
5UQ8|1|a|C|479
5UQ8|1|a|U|480
5UQ8|1|a|G|481
5UQ8|1|a|A|482
5UQ8|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16