3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_145 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.099
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

5UQ8|1|a|G|673
5UQ8|1|a|G|674
5UQ8|1|a|A|675
5UQ8|1|a|A|676
5UQ8|1|a|U|677
5UQ8|1|a|U|678
*
5UQ8|1|a|A|712
5UQ8|1|a|G|713
5UQ8|1|a|G|714
5UQ8|1|a|A|715
5UQ8|1|a|A|716
5UQ8|1|a|C|717

Current chains

Chain a
16S rRNA

Nearby chains

Chain D
50S ribosomal protein L2
Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain r
30S ribosomal protein S18

Coloring options:


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