IL_5UQ8_154

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_154 not in the Motif Atlas

Geometric match to IL_6CZR_151

Geometric discrepancy: 0.2111

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

5UQ8|1|a|G|993
5UQ8|1|a|A|994
5UQ8|1|a|C|995
5UQ8|1|a|A|996
5UQ8|1|a|U|997
*
5UQ8|1|a|A|1044
5UQ8|1|a|C|1045

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z