IL_5UQ8_162

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_162 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.1956

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5UQ8|1|a|G|1124
5UQ8|1|a|U|1125
5UQ8|1|a|U|1126
5UQ8|1|a|G|1127
*
5UQ8|1|a|C|1145
5UQ8|1|a|A|1146
5UQ8|1|a|C|1147
5UQ8|1|a|U|1148
5UQ8|1|a|C|1149

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10