IL_5UQ8_166

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5UQ8|1|a|U|1257, 5UQ8|1|a|A|1280, 5UQ8|1|a|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_166 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2711

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5UQ8|1|a|G|1255
5UQ8|1|a|A|1256
5UQ8|1|a|U|1257
5UQ8|1|a|G|1258
*
5UQ8|1|a|C|1277
5UQ8|1|a|U|1278
5UQ8|1|a|A|1279
5UQ8|1|a|A|1280
5UQ8|1|a|U|1281
5UQ8|1|a|C|1282

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z