3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
5UQ8|1|a|U|1257, 5UQ8|1|a|A|1280, 5UQ8|1|a|U|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_166 not in the Motif Atlas
Homologous match to IL_4LFB_052
Geometric discrepancy: 0.2711
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

5UQ8|1|a|G|1255
5UQ8|1|a|A|1256
5UQ8|1|a|U|1257
5UQ8|1|a|G|1258
*
5UQ8|1|a|C|1277
5UQ8|1|a|U|1278
5UQ8|1|a|A|1279
5UQ8|1|a|A|1280
5UQ8|1|a|U|1281
5UQ8|1|a|C|1282

Current chains

Chain a
16S rRNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14 type Z

Coloring options:


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