IL_5UQ8_184

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5UQ8|1|A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_184 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.083

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5UQ8|1|A|C|844
5UQ8|1|A|G|845
5UQ8|1|A|C|846
5UQ8|1|A|U|847
5UQ8|1|A|G|848
5UQ8|1|A|A|849
5UQ8|1|A|C|850
*
5UQ8|1|A|G|927
5UQ8|1|A|G|928
5UQ8|1|A|U|930
5UQ8|1|A|G|931
5UQ8|1|A|G|932
5UQ8|1|A|A|933
5UQ8|1|A|G|934

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30