3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAAU*GGAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_190 not in the Motif Atlas
Homologous match to IL_4LFB_065
Geometric discrepancy: 0.1058
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

5UQ8|1|a|G|673
5UQ8|1|a|G|674
5UQ8|1|a|A|675
5UQ8|1|a|A|676
5UQ8|1|a|U|677
*
5UQ8|1|a|G|713
5UQ8|1|a|G|714
5UQ8|1|a|A|715
5UQ8|1|a|A|716
5UQ8|1|a|C|717

Current chains

Chain a
16S rRNA

Nearby chains

Chain D
50S ribosomal protein L2
Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain r
30S ribosomal protein S18

Coloring options:


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