IL_5UYK_013
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYK_013 not in the Motif Atlas
- Geometric match to IL_4Y1M_005
- Geometric discrepancy: 0.1421
- The information below is about IL_4Y1M_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
5UYK|1|01|C|564
5UYK|1|01|C|565
5UYK|1|01|U|566
*
5UYK|1|01|A|575
5UYK|1|01|U|576
5UYK|1|01|G|577
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 06
- 50S ribosomal protein L4
- Chain 14
- 50S ribosomal protein L15
- Chain 19
- 50S ribosomal protein L20
- Chain 20
- 50S ribosomal protein L21
Coloring options: