3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
5UYK|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYK_146 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.1755
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

5UYK|1|A|U|684
5UYK|1|A|G|685
5UYK|1|A|U|686
5UYK|1|A|A|687
5UYK|1|A|G|688
*
5UYK|1|A|C|699
5UYK|1|A|G|700
5UYK|1|A|U|701
5UYK|1|A|A|702
5UYK|1|A|G|703
5UYK|1|A|A|704
5UYK|1|A|G|705
5UYK|1|A|A|706

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 01
Large subunit ribosomal RNA; LSU rRNA
Chain K
30S ribosomal protein S11

Coloring options:


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