IL_5UYM_099

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

5UYM|1|01|U|2689, 5UYM|1|01|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYM_099 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0865

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5UYM|1|01|U|2687
5UYM|1|01|G|2688
5UYM|1|01|U|2689
5UYM|1|01|U|2690
5UYM|1|01|C|2691
*
5UYM|1|01|G|2718
5UYM|1|01|G|2719
5UYM|1|01|U|2720
5UYM|1|01|A|2721
5UYM|1|01|G|2722

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 16

50S ribosomal protein L17

Chain 18

50S ribosomal protein L19