3D structure

PDB id
5UYM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
5UYM|1|A|A|532, 5UYM|1|A|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYM_135 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1602
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

5UYM|1|A|G|515
5UYM|1|A|U|516
5UYM|1|A|G|517
5UYM|1|A|C|518
5UYM|1|A|C|519
5UYM|1|A|A|520
5UYM|1|A|G|521
*
5UYM|1|A|C|528
5UYM|1|A|G|529
5UYM|1|A|G|530
5UYM|1|A|U|531
5UYM|1|A|A|532
5UYM|1|A|A|533
5UYM|1|A|U|534
5UYM|1|A|A|535
5UYM|1|A|C|536

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12
Chain V
mRNA
Chain Y
Transfer RNA; tRNA

Coloring options:


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