IL_5UYN_083
3D structure
- PDB id
- 5UYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAGG*CCGACCUUGAAAUAC
- Length
- 20 nucleotides
- Bulged bases
- 5UYN|1|01|A|2126, 5UYN|1|01|A|2163, 5UYN|1|01|G|2168, 5UYN|1|01|U|2172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYN_083 not in the Motif Atlas
- Homologous match to IL_5J7L_329
- Geometric discrepancy: 0.4688
- The information below is about IL_5J7L_329
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_87290.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
5UYN|1|01|G|2124
5UYN|1|01|G|2125
5UYN|1|01|A|2126
5UYN|1|01|G|2127
5UYN|1|01|G|2128
*
5UYN|1|01|C|2160
5UYN|1|01|C|2161
5UYN|1|01|G|2162
5UYN|1|01|A|2163
5UYN|1|01|C|2164
5UYN|1|01|C|2165
5UYN|1|01|U|2166
5UYN|1|01|U|2167
5UYN|1|01|G|2168
5UYN|1|01|A|2169
5UYN|1|01|A|2170
5UYN|1|01|A|2171
5UYN|1|01|U|2172
5UYN|1|01|A|2173
5UYN|1|01|C|2174
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 03
- 50S ribosomal protein L1
- Chain X
- Transfer RNA; tRNA
Coloring options: