IL_5UYN_180

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYN_180 not in the Motif Atlas

Geometric match to IL_4WF9_121

Geometric discrepancy: 0.3858

The information below is about IL_4WF9_121

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5UYN|1|01|G|1062
5UYN|1|01|G|1063
5UYN|1|01|C|1064
*
5UYN|1|01|G|1074
5UYN|1|01|C|1075
5UYN|1|01|C|1076

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L11

Chain 15

50S ribosomal protein L16