IL_5UYP_067

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5UYP|1|01|A|1801, 5UYP|1|01|C|1816, 5UYP|1|01|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1022

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5UYP|1|01|U|1798
5UYP|1|01|G|1799
5UYP|1|01|C|1800
5UYP|1|01|A|1801
5UYP|1|01|A|1802
5UYP|1|01|A|1803
5UYP|1|01|C|1804
*
5UYP|1|01|G|1813
5UYP|1|01|G|1814
5UYP|1|01|A|1815
5UYP|1|01|C|1816
5UYP|1|01|G|1817
5UYP|1|01|U|1818
5UYP|1|01|A|1819
5UYP|1|01|U|1820
5UYP|1|01|A|1821

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain A

Small subunit ribosomal RNA; SSU rRNA