IL_5UYP_080

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCU*AUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_080 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.2727

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5UYP|1|01|G|2102
5UYP|1|01|C|2103
5UYP|1|01|C|2104
5UYP|1|01|U|2105
*
5UYP|1|01|A|2184
5UYP|1|01|U|2185
5UYP|1|01|G|2186
5UYP|1|01|U|2187

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 03

50S ribosomal protein L1