IL_5UYQ_066

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_066 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2423

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

5UYQ|1|01|U|1720
5UYQ|1|01|G|1721
5UYQ|1|01|A|1722
5UYQ|1|01|G|1723
5UYQ|1|01|G|1724
5UYQ|1|01|U|1725
*
5UYQ|1|01|A|1735
5UYQ|1|01|U|1736
5UYQ|1|01|G|1737
5UYQ|1|01|G|1738
5UYQ|1|01|A|1739
5UYQ|1|01|G|1740

Current chains

Chain 01

23S ribosomal RNA

Nearby chains