IL_5UYQ_068

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5UYQ|1|01|A|1801, 5UYQ|1|01|C|1816, 5UYQ|1|01|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_068 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0945

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5UYQ|1|01|U|1798
5UYQ|1|01|G|1799
5UYQ|1|01|C|1800
5UYQ|1|01|A|1801
5UYQ|1|01|A|1802
5UYQ|1|01|A|1803
5UYQ|1|01|C|1804
*
5UYQ|1|01|G|1813
5UYQ|1|01|G|1814
5UYQ|1|01|A|1815
5UYQ|1|01|C|1816
5UYQ|1|01|G|1817
5UYQ|1|01|U|1818
5UYQ|1|01|A|1819
5UYQ|1|01|U|1820
5UYQ|1|01|A|1821

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain A

Small subunit ribosomal RNA; SSU rRNA