IL_5UYQ_082
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGAUG*CUUUAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYQ_082 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3633
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5UYQ|1|01|U|2105
5UYQ|1|01|U|2106
5UYQ|1|01|G|2107
5UYQ|1|01|A|2108
5UYQ|1|01|U|2109
5UYQ|1|01|G|2110
*
5UYQ|1|01|C|2179
5UYQ|1|01|U|2180
5UYQ|1|01|U|2181
5UYQ|1|01|U|2182
5UYQ|1|01|A|2183
5UYQ|1|01|A|2184
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 03
- 50S ribosomal protein L1
- Chain K
- 30S ribosomal protein S11
- Chain X
- Transfer RNA; tRNA
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