IL_5UYQ_097
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5UYQ|1|01|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYQ_097 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.1237
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5UYQ|1|01|C|2636
5UYQ|1|01|U|2637
5UYQ|1|01|G|2638
5UYQ|1|01|A|2639
5UYQ|1|01|G|2640
*
5UYQ|1|01|C|2774
5UYQ|1|01|G|2775
5UYQ|1|01|A|2776
5UYQ|1|01|G|2777
5UYQ|1|01|A|2778
5UYQ|1|01|U|2779
5UYQ|1|01|G|2780
5UYQ|1|01|A|2781
5UYQ|1|01|G|2782
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 12
- 50S ribosomal protein L13
Coloring options: