IL_5UYQ_135

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5UYQ|1|A|A|532, 5UYQ|1|A|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_135 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1865

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5UYQ|1|A|G|515
5UYQ|1|A|U|516
5UYQ|1|A|G|517
5UYQ|1|A|C|518
5UYQ|1|A|C|519
5UYQ|1|A|A|520
5UYQ|1|A|G|521
*
5UYQ|1|A|C|528
5UYQ|1|A|G|529
5UYQ|1|A|G|530
5UYQ|1|A|U|531
5UYQ|1|A|A|532
5UYQ|1|A|A|533
5UYQ|1|A|U|534
5UYQ|1|A|A|535
5UYQ|1|A|C|536

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain L

30S ribosomal protein S12

Chain V

mRNA

Chain Y

Transfer RNA; tRNA