IL_5UZ4_001
3D structure
- PDB id
- 5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AUUGA*UAAU
- Length
- 9 nucleotides
- Bulged bases
- 5UZ4|1|A|G|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UZ4_001 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.2663
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5UZ4|1|A|A|28
5UZ4|1|A|U|29
5UZ4|1|A|U|30
5UZ4|1|A|G|31
5UZ4|1|A|A|32
*
5UZ4|1|A|U|552
5UZ4|1|A|A|553
5UZ4|1|A|A|554
5UZ4|1|A|U|555
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
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