IL_5UZ4_018

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGGG*CCUGA

Length

9 nucleotides

Bulged bases

5UZ4|1|A|G|388

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_018 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2717

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5UZ4|1|A|U|375
5UZ4|1|A|G|376
5UZ4|1|A|G|377
5UZ4|1|A|G|378
*
5UZ4|1|A|C|385
5UZ4|1|A|C|386
5UZ4|1|A|U|387
5UZ4|1|A|G|388
5UZ4|1|A|A|389

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20