IL_5UZ4_056
3D structure
- PDB id
- 5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CGGAUUGG*CCAUGAAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UZ4_056 not in the Motif Atlas
- Geometric match to IL_4WF9_119
- Geometric discrepancy: 0.3552
- The information below is about IL_4WF9_119
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00087.1
- Basepair signature
- cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
5UZ4|1|A|C|1303
5UZ4|1|A|G|1304
5UZ4|1|A|G|1305
5UZ4|1|A|A|1306
5UZ4|1|A|U|1307
5UZ4|1|A|U|1308
5UZ4|1|A|G|1309
5UZ4|1|A|G|1310
*
5UZ4|1|A|C|1327
5UZ4|1|A|C|1328
5UZ4|1|A|A|1329
5UZ4|1|A|U|1330
5UZ4|1|A|G|1331
5UZ4|1|A|A|1332
5UZ4|1|A|A|1333
5UZ4|1|A|G|1334
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S19
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