IL_5UZ4_065

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGCAG*CAUGCC

Length

11 nucleotides

Bulged bases

5UZ4|1|A|A|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_065 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3442

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5UZ4|1|A|G|41
5UZ4|1|A|G|42
5UZ4|1|A|C|43
5UZ4|1|A|A|44
5UZ4|1|A|G|45
*
5UZ4|1|A|C|396
5UZ4|1|A|A|397
5UZ4|1|A|U|398
5UZ4|1|A|G|399
5UZ4|1|A|C|400
5UZ4|1|A|C|401

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16