IL_5UZ4_077

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

5UZ4|1|A|A|1394

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_077 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.282

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5UZ4|1|A|U|921
5UZ4|1|A|G|922
5UZ4|1|A|A|923
*
5UZ4|1|A|U|1393
5UZ4|1|A|A|1394
5UZ4|1|A|C|1395
5UZ4|1|A|A|1396

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain E

30S ribosomal protein S5