IL_5UZ4_087

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_087 not in the Motif Atlas

Geometric match to IL_8C3A_393

Geometric discrepancy: 0.2291

The information below is about IL_8C3A_393

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5UZ4|1|A|A|1350
5UZ4|1|A|U|1351
5UZ4|1|A|C|1352
*
5UZ4|1|A|G|1370
5UZ4|1|A|G|1371
5UZ4|1|A|U|1372

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9