IL_5V7Q_004
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- ACGUGGGAGGCUGCGAUAUGC*GAUUU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_004 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.3316
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
5V7Q|1|A|A|56
5V7Q|1|A|C|57
5V7Q|1|A|G|58
5V7Q|1|A|U|59
5V7Q|1|A|G|60
5V7Q|1|A|G|61
5V7Q|1|A|G|62
5V7Q|1|A|A|63
5V7Q|1|A|G|64
5V7Q|1|A|G|65
5V7Q|1|A|C|66
5V7Q|1|A|U|67
5V7Q|1|A|G|68
5V7Q|1|A|C|69
5V7Q|1|A|G|70
5V7Q|1|A|A|71
5V7Q|1|A|U|72
5V7Q|1|A|A|73
5V7Q|1|A|U|74
5V7Q|1|A|G|75
5V7Q|1|A|C|76
*
5V7Q|1|A|G|110
5V7Q|1|A|A|111
5V7Q|1|A|U|112
5V7Q|1|A|U|113
5V7Q|1|A|U|114
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain T
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L29
Coloring options: