IL_5V7Q_007
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAAGUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_007 not in the Motif Atlas
- Geometric match to IL_7A0S_006
- Geometric discrepancy: 0.1896
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5V7Q|1|A|G|190
5V7Q|1|A|G|191
5V7Q|1|A|A|192
5V7Q|1|A|A|193
5V7Q|1|A|G|194
5V7Q|1|A|U|195
5V7Q|1|A|G|196
*
5V7Q|1|A|C|203
5V7Q|1|A|U|204
5V7Q|1|A|C|205
5V7Q|1|A|A|206
5V7Q|1|A|G|207
5V7Q|1|A|U|208
5V7Q|1|A|A|209
5V7Q|1|A|C|210
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L28
Coloring options: