IL_5V7Q_012

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_012 not in the Motif Atlas

Geometric match to IL_4WF9_098

Geometric discrepancy: 0.2918

The information below is about IL_4WF9_098

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

5V7Q|1|A|G|370
5V7Q|1|A|U|371
5V7Q|1|A|G|372
*
5V7Q|1|A|C|433
5V7Q|1|A|C|434

Current chains

Chain A

23S rRNA

Nearby chains