IL_5V7Q_023
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAGC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5V7Q|1|A|G|930, 5V7Q|1|A|G|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_023 not in the Motif Atlas
- Geometric match to IL_7RQB_018
- Geometric discrepancy: 0.201
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5V7Q|1|A|G|803
5V7Q|1|A|A|804
5V7Q|1|A|A|805
5V7Q|1|A|G|806
5V7Q|1|A|C|807
*
5V7Q|1|A|G|928
5V7Q|1|A|U|929
5V7Q|1|A|G|930
5V7Q|1|A|A|931
5V7Q|1|A|U|932
5V7Q|1|A|A|933
5V7Q|1|A|G|934
5V7Q|1|A|C|935
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
Coloring options: