IL_5V7Q_048
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UCAGCGAAG*UGGAGG
- Length
- 15 nucleotides
- Bulged bases
- 5V7Q|1|A|C|1342
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_048 not in the Motif Atlas
- Geometric match to IL_6HCT_001
- Geometric discrepancy: 0.2889
- The information below is about IL_6HCT_001
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_74205.1
- Basepair signature
- cWW-cWW-tSS-tSH-L-tHS-R-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5V7Q|1|A|U|1338
5V7Q|1|A|C|1339
5V7Q|1|A|A|1340
5V7Q|1|A|G|1341
5V7Q|1|A|C|1342
5V7Q|1|A|G|1343
5V7Q|1|A|A|1344
5V7Q|1|A|A|1345
5V7Q|1|A|G|1346
*
5V7Q|1|A|U|1365
5V7Q|1|A|G|1366
5V7Q|1|A|G|1367
5V7Q|1|A|A|1368
5V7Q|1|A|G|1369
5V7Q|1|A|G|1370
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
Coloring options: