IL_5V7Q_050

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

5V7Q|1|A|G|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_050 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.2511

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5V7Q|1|A|G|1450
5V7Q|1|A|C|1451
5V7Q|1|A|C|1452
5V7Q|1|A|A|1453
5V7Q|1|A|G|1454
*
5V7Q|1|A|C|1462
5V7Q|1|A|G|1463
5V7Q|1|A|C|1464

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22