IL_5V7Q_056

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_056 not in the Motif Atlas

Geometric match to IL_3RG5_002

Geometric discrepancy: 0.2241

The information below is about IL_3RG5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

5V7Q|1|A|C|1576
5V7Q|1|A|C|1577
5V7Q|1|A|C|1578
*
5V7Q|1|A|G|1626
5V7Q|1|A|C|1627
5V7Q|1|A|G|1628

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2