IL_5V7Q_072

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUAUC*GGAU

Length

10 nucleotides

Bulged bases

5V7Q|1|A|U|1949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_072 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.3624

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5V7Q|1|A|A|1947
5V7Q|1|A|A|1948
5V7Q|1|A|U|1949
5V7Q|1|A|A|1950
5V7Q|1|A|U|1951
5V7Q|1|A|C|1952
*
5V7Q|1|A|G|1977
5V7Q|1|A|G|1978
5V7Q|1|A|A|1979
5V7Q|1|A|U|1980

Current chains

Chain A

23S rRNA

Nearby chains